New framework empowers programmed examination of biomedical recordings caught by microscopy

New framework empowers programmed examination of biomedical recordings caught by microscopy


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  • Source: Universidad Carlos III de Madrid

  • Date: 14 Feb,2022

Researchers at the Universidad Carlos III de Madrid (UC3M) have developed a system based on computer vision techniques that allows automatic analysis of biomedical videos captured by microscopy in order to characterize and describe the behavior of the cells that appear in the images.

These new techniques developed by the UC3M engineering team have been used for measurements on living tissues, in research carried out with scientists from the National Centre for Cardiovascular Research (CNIC in its Spanish acronym). As a result, the team discovered that neutrophils (a type of immune cell) show different behaviors in the blood during inflammatory processes and have identified that one of them, caused by the Fgr molecule, is associated with the development of cardiovascular disease. This work, recently published in the journal Nature, could allow the development of new treatments to minimize the consequences of heart attacks. Researchers from the Vithas Foundation, the University of Castilla-La Mancha, the Singapore Agency for Science, Technology and Research (ASTAR) and Harvard University (USA), among other centers, have participated in the study.

“Our contribution consists of the design and development of a fully automatic system, based on computer vision techniques, which allows us to characterize the cells under study by analyzing videos captured by biologists using the intravital microscopy technique”, says one of the authors of this work, Professor Fernando Díaz de María, head of the UC3M Multimedia Processing Group. Automatic measurements of the shape, size, movement and position relative to the blood vessel of a few thousand cells have been made, compared to traditional biological studies that are usually supported by analyses of a few hundred manually characterized cells. In this way, it has been possible to carry out a more advanced biological analysis with greater statistical significance.

This new system has several advantages, according to the researchers, in terms of time and precision. Generally speaking, “it is not feasible to keep an expert biologist segmenting and tracking cells on video for months. On the other hand, to provide an approximate idea (because it depends on the number of cells and 3D volume depth), our system only takes 15 minutes to analyze a 5-minute video”, says another of the researchers, Ivan Gonzalez Diaz, Associate Professor in the Signal Theory and Communications Department at UC3M.

In any case, when researching in this field, researchers stress the importance of the work of an interdisciplinary team.

In this context, it is important to recognize the prior communication effort between biologists, mathematicians and engineers, required to understand the basic concepts of other disciplines, before real progress can be made.”

Professor Fernando Díaz de María, Head of the UC3M Multimedia Processing Group

Journal reference:

Molina-Moreno, M., et al. (2022) ACME: Automatic feature extraction for cell migration examination through intravital microscopy imaging. Medical Image Analysis.

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